If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 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'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 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'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 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'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 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'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 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'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 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'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 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'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 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'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 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'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 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'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 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'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 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'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 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'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 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'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 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'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 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'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 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'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 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'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 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'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 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'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 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'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 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'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 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'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 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'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 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'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 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'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 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'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 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'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 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'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 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'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 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'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 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'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 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'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 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'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 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'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 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'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 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'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 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'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 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'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 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'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 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'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 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'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 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'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 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'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 'BcaC07g42756' => 'bca', 'BcaC07g42759' => 'bca', 'BcaC08g45201' => 'bca', 'BcaC08g47012' => 'bca', 'BcaC08g47359' => 'bca', 'BcaNung00684' => 'bca', 'BolC1t00408H' => 'bol', 'BolC2t09285H' => 'bol', 'BolC3t18160H' => 'bol', 'BolC3t18161H' => 'bol', 'BolC3t20852H' => 'bol', 'BolC6t37997H' => 'bol', 'BolC6t38388H' => 'bol', 'BolC6t39972H' => 'bol', 'BolC7t40872H' => 'bol', 'BolC7t46495H' => 'bol', 'BolC8t51305H' => 'bol', 'BolC9t54270H' => 'bol', 'BolC9t54271H' => 'bol', 'BraA01t00377Z' => 'bra', 'BraA02t07025Z' => 'bra', 'BraA03t15373Z' => 'bra', 'BraA06t26266Z' => 'bra', 'BraA06t26267Z' => 'bra', 'BraA07t28050Z' => 'bra', 'BraA07t28051Z' => 'bra', 'BraA07t30246Z' => 'bra', 'BraA07t30528Z' => 'bra', 'BraA07t31634Z' => 'bra', 'BraA08t33637Z' => 'bra', 'BraA09t36819Z' => 'bra', 'BraA09t36820Z' => 'bra', 'BraA09t40851Z' => 'bra', 'C01p04200' => 'bna', 'C02p32540' => 'bna', 'C03p58980' => 'bna', 'C03p85660' => 'bna', 'C06p28270' => 'bna', 'C06p32640' => 'bna', 'C06p49380' => 'bna', 'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ), 'gf_id' => 'HOM05D000697', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000697' ), 'data_identifier' => 'HOM05D000697', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000697', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '818', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p03900' => 'bna', 'A02p19900' => 'bna', 'A03p63000' => 'bna', 'A06p33360' => 'bna', 'A07p02530' => 'bna', 'A07p25990' => 'bna', 'A07p28850' => 'bna', 'A07p40950' => 'bna', 'A08p16720' => 'bna', 'A09p11730' => 'bna', 'A09p54390' => 'bna', 'Aa31LG10G16350' => 'aar', 'Aa31LG2G15920' => 'aar', 'Aa31LG4G5600' => 'aar', 'Aa31LG8G15820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.304' => 'aag', 'Actinidia00544' => 'ach', 'Actinidia02229' => 'ach', 'Actinidia07472' => 'ach', 'Actinidia15360' => 'ach', 'Actinidia16858' => 'ach', 'Actinidia20994' => 'ach', 'Actinidia22516' => 'ach', 'Actinidia25849' => 'ach', 'Actinidia27046' => 'ach', 'Actinidia27881' => 'ach', 'Actinidia29810' => 'ach', 'Actinidia37995' => 'ach', 'Actinidia40366' => 'ach', 'Ah.02g112290' => 'amhyb', 'Ah.02g124930' => 'amhyb', 'Ah.05g176790' => 'amhyb', 'Ah.07g204400' => 'amhyb', 'Ah.11g049250' => 'amhyb', 'Ah.13g070790' => 'amhyb', 'Ah.13g071990' => 'amhyb', 'AL2G35330' => 'aly', 'AL3G51360' => 'aly', 'AL5G45220' => 'aly', 'AL7G16620' => 'aly', 'Aqoxy2G02770' => 'aox', 'Aqoxy5G02880' => 'aox', 'Aqoxy6G01182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0SEA8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6JGL55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76FTKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZXH08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EGF22G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I8B9P0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T95EUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA7IIE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJ3ZRF' => 'arhy', 'AT1G75390' => 'ath', 'AT2G18160' => 'ath', 'AT3G62420' => 'ath', 'AT4G34590' => 'ath', 'ATR0585G084' => 'atr', 'ATR0796G285' => 'atr', 'Atru.chr13.413' => 'acertr', 'Atru.chr13.414' => 'acertr', 'Atru.chr3.664' => 'acertr', 'Atru.chr3.709' => 'acertr', 'Atru.chr5.1001' => 'acertr', 'Atru.chr5.3067' => 'acertr', 'AUR62004100' => 'cqu', 'AUR62005989' => 'cqu', 'AUR62007613' => 'cqu', 'AUR62011806' => 'cqu', 'AUR62016126' => 'cqu', 'AUR62024652' => 'cqu', 'AUR62028081' => 'cqu', 'AUR62034516' => 'cqu', 'AUR62041399' => 'cqu', 'BcaB02g07022' => 'bca', 'BcaB02g07337' => 'bca', 'BcaB03g11824' => 'bca', 'BcaB03g16602' => 'bca', 'BcaB05g24904' => 'bca', 'BcaB07g31683' => 'bca', 'BcaB08g34795' => 'bca', 'BcaC01g00892' => 'bca', 'BcaC03g15570' => 'bca', 'BcaC04g22926' => 'bca', 'BcaC06g36378' => 'bca', 'BcaC07g40726' => 'bca', 'BcaC07g42753' => 'bca', 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'C07p04750' => 'bna', 'C07p60650' => 'bna', 'C08p37270' => 'bna', 'C09p13800' => 'bna', 'CAN.G1076.3' => 'can', 'CAN.G1280.27' => 'can', 'CAN.G1373.26' => 'can', 'CAN.G1544.1' => 'can', 'CAN.G1544.2' => 'can', 'CAN.G358.35' => 'can', 'CAN.G358.36' => 'can', 'CAN.G568.4' => 'can', 'CAN.G568.5' => 'can', 'CAN.G777.13' => 'can', 'CAN.G851.45' => 'can', 'CANSAT01G2179' => 'cansat', 'CANSAT11G1922' => 'cansat', 'CANSAT25G0922' => 'cansat', 'CANSAT25G1765' => 'cansat', 'CARHR068750' => 'chi', 'CARHR068760' => 'chi', 'CARHR108640' => 'chi', 'CARHR172750' => 'chi', 'CARHR242810' => 'chi', 'Carub.0002s2224' => 'cru', 'Carub.0002s2225' => 'cru', 'Carub.0003s3230' => 'cru', 'Carub.0003s3231' => 'cru', 'Carub.0005s2914' => 'cru', 'Carub.0007s0569' => 'cru', 'Carub.0007s0570' => 'cru', 'Ca_09210_v3' => 'car', 'Ca_10284_v3' => 'car', 'Ca_15352_v3' => 'car', 'Ca_20905_v3' => 'car', 'CBR_g67687' => 'cbr', 'Cc00_g15080' => 'ccan', 'Cc01_g21420' => 'ccan', 'Cc02_g35020' => 'ccan', 'Cc10_g02460' => 'ccan', 'Cc10_g02470' => 'ccan', 'CDE02G3005' => 'cde', 'CDE08G1122' => 'cde', 'CDE09G1285' => 'cde', 'Cfa005046' => 'cfa', 'Cfa005801' => 'cfa', 'Cfa006907' => 'cfa', 'Cfa013872' => 'cfa', 'Cfa015333' => 'cfa', 'Ciclev10002731m.g' => 'ccl', 'Ciclev10022730m.g' => 'ccl', 'Ciclev10027415m.g' => 'ccl', 'Ciclev10029834m.g' => 'ccl', 'CiPaw.01G299400' => 'cil', 'CiPaw.05G068000' => 'cil', 'CiPaw.05G068100' => 'cil', 'CiPaw.06G133200' => 'cil', 'CiPaw.06G133300' => 'cil', 'CiPaw.07G050700' => 'cil', 'CiPaw.07G050800' => 'cil', 'CiPaw.07G117500' => 'cil', 'CiPaw.07G157200' => 'cil', 'CiPaw.07G157300' => 'cil', 'CiPaw.08G060300' => 'cil', 'CiPaw.08G060400' => 'cil', 'CiPaw.08G138500' => 'cil', 'CiPaw.08G138600' => 'cil', 'ClCG01G019930' => 'cla', 'ClCG05G018700' => 'cla', 'ClCG07G008680' => 'cla', 'ClCG08G014760' => 'cla', 'ClCG09G005100' => 'cla', 'ClCG10G011390' => 'cla', 'ClCG11G004190' => 'cla', 'COL.COLO4_22013' => 'col', 'COL.COLO4_23232' => 'col', 'COL.COLO4_25979' => 'col', 'COL.COLO4_26247' => 'col', 'COL.COLO4_34637' => 'col', 'Cpa.g.sc18.43' => 'cpa', 'Cpa.g.sc538.1' => 'cpa', 'Cpa.g.sc6.175' => 'cpa', 'Cpa.g.sc9.75' => 'cpa', 'CsaV3_2G014980' => 'csa', 'CsaV3_2G029010' => 'csa', 'CsaV3_3G045480' => 'csa', 'CsaV3_4G001220' => 'csa', 'CsaV3_4G005470' => 'csa', 'CsaV3_6G046670' => 'csa', 'CsaV3_7G029950' => 'csa', 'CSS0001246' => 'camsi', 'CSS0010278' => 'camsi', 'CSS0015012' => 'camsi', 'CSS0015101' => 'camsi', 'CSS0019770' => 'camsi', 'CSS0025808' => 'camsi', 'CSS0025819' => 'camsi', 'CSS0027750' => 'camsi', 'CSS0028165' => 'camsi', 'CSS0031119' => 'camsi', 'CSS0031800' => 'camsi', 'CSS0036486' => 'camsi', 'CSS0050434' => 'camsi', 'DCAR_001561' => 'dca', 'DCAR_002896' => 'dca', 'DCAR_002897' => 'dca', 'DCAR_003659' => 'dca', 'DCAR_004782' => 'dca', 'DCAR_005758' => 'dca', 'DCAR_009964' => 'dca', 'DCAR_012705' => 'dca', 'DCAR_017518' => 'dca', 'DCAR_021480' => 'dca', 'DCAR_022457' => 'dca', 'DCAR_030478' => 'dca', 'Dinv05612' => 'din', 'Dinv10098' => 'din', 'Dinv23492' => 'din', 'Dinv24443' => 'din', 'Dinv31785' => 'din', 'Dinv33115' => 'din', 'Dinv39453' => 'din', 'Dinv44298' => 'din', 'Duzib041G0055' => 'dzi', 'Duzib052G0815' => 'dzi', 'Duzib093G2112' => 'dzi', 'Duzib116G0107' => 'dzi', 'Duzib132G0329' => 'dzi', 'Duzib133G0134' => 'dzi', 'Duzib138G1356' => 'dzi', 'Duzib147G1667' => 'dzi', 'Duzib151G0842' => 'dzi', 'Duzib187G1543' => 'dzi', 'Duzib211G0124' => 'dzi', 'Duzib213G0368' => 'dzi', 'Duzib248G1560' => 'dzi', 'Duzib264G0767' => 'dzi', 'ECA234G0361' => 'eca', 'ECA236G0269' => 'eca', 'ECA236G2955' => 'eca', 'ECA240G3147' => 'eca', 'ECA246G1397' => 'eca', 'ECA246G5110' => 'eca', 'ECA247G0782' => 'eca', 'ECA248G3639' => 'eca', 'EL10Ac1g00618' => 'bvu', 'EL10Ac3g05169' => 'bvu', 'EL10Ac3g05466' => 'bvu', 'EL10As5g23530' => 'bvu', 'EL10As8g23897' => 'bvu', 'Eucgr.F01599' => 'egr', 'Eucgr.F01867' => 'egr', 'Eucgr.G01645' => 'egr', 'Eucgr.H01022' => 'egr', 'Eucgr.H04038' => 'egr', 'Eucgr.I01289' => 'egr', 'Eucgr.I02396' => 'egr', 'Eucgr.I02397' => 'egr', 'Eucgr.K03544' => 'egr', 'Eucgr.L01254' => 'egr', 'Eucgr.L01789' => 'egr', 'FAN04G0941' => 'fan', 'FAN08G3656' => 'fan', 'FAN13G0960' => 'fan', 'FAN15G1563' => 'fan', 'FAN15G1852' => 'fan', 'FAN18G2971' => 'fan', 'FAN19G2851' => 'fan', 'FAN20G0406' => 'fan', 'FAN20G0826' => 'fan', 'FAN20G1492' => 'fan', 'FAN23G2049' => 'fan', 'FAN24G3114' => 'fan', 'FAN26G1979' => 'fan', 'FAN26G2107' => 'fan', 'FAN26G2173' => 'fan', 'FAN27G0060' => 'fan', 'FAN27G3145' => 'fan', 'FAN27G3458' => 'fan', 'FAN28G2503' => 'fan', 'FvH4_1g12620' => 'fve', 'FvH4_2g09540' => 'fve', 'FvH4_2g39350' => 'fve', 'FvH4_5g39200' => 'fve', 'Glyma.02G012700' => 'gma', 'Glyma.03G219300' => 'gma', 'Glyma.04G010300' => 'gma', 'Glyma.04G010400' => 'gma', 'Glyma.04G029600' => 'gma', 'Glyma.05G157000' => 'gma', 'Glyma.05G157100' => 'gma', 'Glyma.06G010200' => 'gma', 'Glyma.06G010300' => 'gma', 'Glyma.06G029600' => 'gma', 'Glyma.08G115251' => 'gma', 'Glyma.08G115300' => 'gma', 'Glyma.10G013300' => 'gma', 'Glyma.11G114800' => 'gma', 'Glyma.11G114900' => 'gma', 'Glyma.12G040600' => 'gma', 'Glyma.12G040700' => 'gma', 'Glyma.14G071400' => 'gma', 'Glyma.14G071500' => 'gma', 'Glyma.17G253132' => 'gma', 'Glyma.17G253200' => 'gma', 'Glyma.19G216200' => 'gma', 'Gohir.A01G114100' => 'ghi', 'Gohir.A03G196600' => 'ghi', 'Gohir.A04G124500' => 'ghi', 'Gohir.A05G190900' => 'ghi', 'Gohir.A06G007100' => 'ghi', 'Gohir.A06G007200' => 'ghi', 'Gohir.A07G128500' => 'ghi', 'Gohir.A08G040700' => 'ghi', 'Gohir.A09G065900' => 'ghi', 'Gohir.A11G110000' => 'ghi', 'Gohir.A11G181800' => 'ghi', 'Gohir.A12G062200' => 'ghi', 'Gohir.A12G062300' => 'ghi', 'Gohir.A12G125000' => 'ghi', 'Gohir.A13G032800' => 'ghi', 'Gohir.D01G102700' => 'ghi', 'Gohir.D01G102800' => 'ghi', 'Gohir.D02G095800' => 'ghi', 'Gohir.D02G095900' => 'ghi', 'Gohir.D02G217700' => 'ghi', 'Gohir.D02G217800' => 'ghi', 'Gohir.D04G166600' => 'ghi', 'Gohir.D05G194300' => 'ghi', 'Gohir.D05G194400' => 'ghi', 'Gohir.D06G003300' => 'ghi', 'Gohir.D07G132900' => 'ghi', 'Gohir.D08G050800' => 'ghi', 'Gohir.D09G065100' => 'ghi', 'Gohir.D11G114200' => 'ghi', 'Gohir.D11G188500' => 'ghi', 'Gohir.D11G188600' => 'ghi', 'Gohir.D12G062100' => 'ghi', 'Gohir.D12G128700' => 'ghi', 'Gohir.D13G030866' => 'ghi', 'Gorai.001G144200' => 'gra', 'Gorai.002G126500' => 'gra', 'Gorai.004G050400' => 'gra', 'Gorai.005G109600' => 'gra', 'Gorai.005G245700' => 'gra', 'Gorai.006G079800' => 'gra', 'Gorai.007G122800' => 'gra', 'Gorai.007G200600' => 'gra', 'Gorai.008G065300' => 'gra', 'Gorai.008G139700' => 'gra', 'Gorai.009G199300' => 'gra', 'Gorai.010G008000' => 'gra', 'Gorai.012G155000' => 'gra', 'Gorai.013G035200' => 'gra', 'GSVIVG01023817001' => 'vvi', 'GSVIVG01031238001' => 'vvi', 'HanXRQChr01g0000781' => 'han', 'HanXRQChr01g0029831' => 'han', 'HanXRQChr01g0029961' => 'han', 'HanXRQChr03g0073411' => 'han', 'HanXRQChr03g0074821' => 'han', 'HanXRQChr04g0104571' => 'han', 'HanXRQChr04g0106071' => 'han', 'HanXRQChr04g0127851' => 'han', 'HanXRQChr06g0168171' => 'han', 'HanXRQChr09g0269581' => 'han', 'HanXRQChr10g0305011' => 'han', 'HanXRQChr11g0340061' => 'han', 'HanXRQChr12g0376231' => 'han', 'HanXRQChr16g0501471' => 'han', 'HanXRQChr16g0505441' => 'han', 'Haze_01282' => 'cav', 'Haze_02336' => 'cav', 'Haze_03848' => 'cav', 'Haze_05040' => 'cav', 'Haze_22552' => 'cav', 'Hma1.2p1_0066F.1_g036170' => 'hma', 'Hma1.2p1_0212F.1_g089940' => 'hma', 'Hma1.2p1_0775F.1_g216550' => 'hma', 'Hma1.2p1_1297F.1_g273960' => 'hma', 'Hma1.2p1_1910F.1_g307270' => 'hma', 'HPP92_003568' => 'vpl', 'HPP92_004910' => 'vpl', 'HPP92_008322' => 'vpl', 'HPP92_013525' => 'vpl', 'HPP92_020155' => 'vpl', 'HPP92_021558' => 'vpl', 'HPP92_023143' => 'vpl', 'HPP92_026196' => 'vpl', 'HPP92_026865' => 'vpl', 'HPP92_027778' => 'vpl', 'Lalb_Chr01g0002341' => 'lal', 'Lalb_Chr02g0146811' => 'lal', 'Lalb_Chr06g0166861' => 'lal', 'Lalb_Chr07g0186521' => 'lal', 'Lalb_Chr08g0246681' => 'lal', 'Lalb_Chr11g0062201' => 'lal', 'Lalb_Chr11g0062211' => 'lal', 'Lalb_Chr12g0205211' => 'lal', 'Lalb_Chr14g0369491' => 'lal', 'Lalb_Chr14g0369501' => 'lal', 'Lalb_Chr19g0138811' => 'lal', 'Lalb_Chr21g0309581' => 'lal', 'Lalb_Chr22g0354591' => 'lal', 'Lalb_Chr23g0265311' => 'lal', 'Lalb_Chr23g0265321' => 'lal', 'Lalb_Chr23g0266501' => 'lal', 'Lalb_Chr23g0266511' => 'lal', 'Lj1C17T9' => 'lonja', 'Lj1g0005603' => 'lja', 'Lj1g0024778' => 'lja', 'Lj1g0028029' => 'lja', 'Lj2P458T47' => 'lonja', 'Lj3g0014331' => 'lja', 'Lj4C34T9' => 'lonja', 'Lj4g0025152' => 'lja', 'Lj5g0007803' => 'lja', 'Lj5g0026084' => 'lja', 'Lj5P194T61' => 'lonja', 'Lj5P334T33' => 'lonja', 'Lj6P689T39' => 'lonja', 'Lj9P376T16' => 'lonja', 'Lsat_1_v5_gn_0_45360' => 'lsa', 'Lsat_1_v5_gn_1_17120' => 'lsa', 'Lsat_1_v5_gn_1_45641' => 'lsa', 'Lsat_1_v5_gn_1_73701' => 'lsa', 'Lsat_1_v5_gn_2_119841' => 'lsa', 'Lsat_1_v5_gn_3_77041' => 'lsa', 'Lsat_1_v5_gn_4_117001' => 'lsa', 'Lsat_1_v5_gn_4_136921' => 'lsa', 'Lsat_1_v5_gn_5_120641' => 'lsa', 'Lsat_1_v5_gn_5_26620' => 'lsa', 'Lsat_1_v5_gn_7_90381' => 'lsa', 'Lsat_1_v5_gn_8_166781' => 'lsa', 'Lsat_1_v5_gn_9_108121' => 'lsa', 'Manes.01G227900' => 'mes', 'Manes.02G097800' => 'mes', 'Manes.02G097900' => 'mes', 'Manes.04G074110' => 'mes', 'Manes.04G074300' => 'mes', 'Manes.05G003300' => 'mes', 'Manes.05G155266' => 'mes', 'Manes.05G155332' => 'mes', 'Manes.06G019400' => 'mes', 'Manes.11G084900' => 'mes', 'Manes.11G085000' => 'mes', 'Manes.18G021001' => 'mes', 'Manes.18G021051' => 'mes', 'Mapoly0034s0126' => 'mpo', 'MBI10_g00750_MAGBIO' => 'mbi', 'MBI16_g37913_MAGBIO' => 'mbi', 'MBI18_g17318_MAGBIO' => 'mbi', 'MBI19_g07239_MAGBIO' => 'mbi', 'MD02G1140600' => 'mdo', 'MD03G1295200' => 'mdo', 'MD05G1062200' => 'mdo', 'MD08G1025800' => 'mdo', 'MD10G1069900' => 'mdo', 'MD11G1314100' => 'mdo', 'MD15G1022500' => 'mdo', 'MD15G1253800' => 'mdo', 'Medtr1g022495' => 'mtr', 'Medtr1g087040' => 'mtr', 'Medtr3g112220' => 'mtr', 'Medtr3g117120' => 'mtr', 'Medtr4g070860' => 'mtr', 'Medtr7g109510' => 'mtr', 'Medtr8g086020' => 'mtr', 'MELO3C003794.2' => 'cme', 'MELO3C007865.2' => 'cme', 'MELO3C010967.2' => 'cme', 'MELO3C015925.2' => 'cme', 'MELO3C016400.2' => 'cme', 'MELO3C016401.2' => 'cme', 'MELO3C017918.2' => 'cme', 'MELO3C023318.2' => 'cme', 'Migut.B00214' => 'egut', 'Migut.B00215' => 'egut', 'Migut.C00766' => 'egut', 'Migut.C00767' => 'egut', 'Migut.D00084' => 'egut', 'Migut.G00047' => 'egut', 'Migut.H02515' => 'egut', 'Migut.H02516' => 'egut', 'Migut.N00472' => 'egut', 'Migut.N00473' => 'egut', 'MSTRG.10146' => 'ama', 'MSTRG.1251' => 'ama', 'MSTRG.18103' => 'ama', 'MSTRG.20065' => 'ama', 'MSTRG.21686' => 'ama', 'MSTRG.22313' => 'ama', 'MSTRG.24277' => 'ama', 'MSTRG.25199' => 'ama', 'MSTRG.27685' => 'ama', 'MSTRG.3862' => 'ama', 'Nitab4.5_0000136g0170' => 'nta', 'Nitab4.5_0000363g0280' => 'nta', 'Nitab4.5_0000368g0110' => 'nta', 'Nitab4.5_0000723g0200' => 'nta', 'Nitab4.5_0001317g0160' => 'nta', 'Nitab4.5_0003234g0110' => 'nta', 'Nitab4.5_0003313g0060' => 'nta', 'Nitab4.5_0003540g0010' => 'nta', 'Nitab4.5_0003682g0040' => 'nta', 'Nitab4.5_0003894g0010' => 'nta', 'Nitab4.5_0004873g0010' => 'nta', 'Nitab4.5_0007407g0030' => 'nta', 'Nitab4.5_0007454g0020' => 'nta', 'Nitab4.5_0007928g0020' => 'nta', 'Nitab4.5_0008277g0020' => 'nta', 'Nitab4.5_0009447g0010' => 'nta', 'Nitab4.5_0011585g0010' => 'nta', 'Nitab4.5_0016166g0010' => 'nta', 'Nn3g21690' => 'nnu', 'Nn4g25598' => 'nnu', 'Nn5g29701' => 'nnu', 'Oeu002037.1' => 'oeu', 'Oeu007032.1' => 'oeu', 'Oeu008473.1' => 'oeu', 'Oeu019969.1' => 'oeu', 'Oeu020739.1' => 'oeu', 'Oeu030419.1' => 'oeu', 'Oeu030595.1' => 'oeu', 'Oeu030596.1' => 'oeu', 'Oeu037315.1' => 'oeu', 'Oeu038018.1' => 'oeu', 'Oeu041625.1' => 'oeu', 'Oeu046151.1' => 'oeu', 'Oeu047760.1' => 'oeu', 'Oeu047761.1' => 'oeu', 'Oeu052980.1' => 'oeu', 'Oeu061222.1' => 'oeu', 'Os02g0132500' => 'osa', 'Os05g0129300' => 'osa', 'Os08g0357300' => 'osa', 'Os09g0306400' => 'osa', 'Peaxi162Scf00003g00086' => 'pax', 'Peaxi162Scf00010g00091' => 'pax', 'Peaxi162Scf00016g00411' => 'pax', 'Peaxi162Scf00028g00183' => 'pax', 'Peaxi162Scf00058g00267' => 'pax', 'Peaxi162Scf00285g00011' => 'pax', 'Peaxi162Scf00418g00083' => 'pax', 'Peaxi162Scf00484g00012' => 'pax', 'Peaxi162Scf00673g00034' => 'pax', 'Peaxi162Scf00684g00027' => 'pax', 'Peaxi162Scf00691g00021' => 'pax', 'Peaxi162Scf00750g00012' => 'pax', 'PGR004G0462' => 'pgr', 'PGR031G0869' => 'pgr', 'PGR042G3012' => 'pgr', 'PGR044G0370' => 'pgr', 'PGR083G0289' => 'pgr', 'PGR083G1543' => 'pgr', 'PGR083G2421' => 'pgr', 'PGR119G1500' => 'pgr', 'PGR142G3254' => 'pgr', 'PGSC0003DMG400003529' => 'stu', 'PGSC0003DMG400003701' => 'stu', 'PGSC0003DMG400005476' => 'stu', 'PGSC0003DMG400007301' => 'stu', 'PGSC0003DMG400015494' => 'stu', 'PGSC0003DMG400016906' => 'stu', 'PGSC0003DMG400022589' => 'stu', 'PGSC0003DMG400030946' => 'stu', 'PGSC0003DMG400035130' => 'stu', 'PGSC0003DMG400037737' => 'stu', 'PGSC0003DMG402002771' => 'stu', 'Phvul.001G011800' => 'pvu', 'Phvul.001G011900' => 'pvu', 'Phvul.001G212800' => 'pvu', 'Phvul.002G237600' => 'pvu', 'Phvul.002G237700' => 'pvu', 'Phvul.007G214300' => 'pvu', 'Phvul.009G005800' => 'pvu', 'Phvul.009G005900' => 'pvu', 'Phvul.009G060900' => 'pvu', 'Phvul.009G060950' => 'pvu', 'Phvul.011G042600' => 'pvu', 'Phvul.011G042700' => 'pvu', 'Potri.002G031900' => 'ptr', 'Potri.002G032000' => 'ptr', 'Potri.002G196200' => 'ptr', 'Potri.004G158150' => 'ptr', 'Potri.004G158200' => 'ptr', 'Potri.005G119300' => 'ptr', 'Potri.005G119400' => 'ptr', 'Potri.005G231250' => 'ptr', 'Potri.005G231300' => 'ptr', 'Potri.007G019900' => 'ptr', 'Potri.007G020000' => 'ptr', 'Potri.008G106700' => 'ptr', 'Potri.009G119650' => 'ptr', 'Potri.009G119700' => 'ptr', 'Potri.010G142900' => 'ptr', 'Potri.014G120800' => 'ptr', 'Pp3c13_15010' => 'ppa', 'Pp3c14_24440' => 'ppa', 'Pp3c15_5820' => 'ppa', 'Prupe.1G374400' => 'ppe', 'Prupe.1G374500' => 'ppe', 'Prupe.7G160500' => 'ppe', 'Prupe.7G160600' => 'ppe', 'Prupe.8G091600' => 'ppe', 'Prupe.8G091700' => 'ppe', 'Prupe.8G267100' => 'ppe', 'Psat0s2991g0040' => 'psa', 'Psat0s656g0080' => 'psa', 'Psat5g005640' => 'psa', 'Psat6g009600' => 'psa', 'Psat6g161680' => 'psa', 'Psat7g071200' => 'psa', 'Psat7g140160' => 'psa', 'PSO170G1051' => 'pso', 'PSO210G6856' => 'pso', 'PSO357G0541' => 'pso', 'PSO478G3284' => 'pso', 'PSO541G0481' => 'pso', 'PSO675G5207' => 'pso', 'PSO761G0678' => 'pso', 'PSO782G2927' => 'pso', 'QL02p009571' => 'qlo', 'QL06p011768' => 'qlo', 'QL06p035227' => 'qlo', 'QL09p002107' => 'qlo', 'QL11p045171' => 'qlo', 'QL12p019949' => 'qlo', 'RcHm_v2.0_Chr2g0100571' => 'rch', 'RcHm_v2.0_Chr6g0265831' => 'rch', 'RcHm_v2.0_Chr6g0301661' => 'rch', 'RcHm_v2.0_Chr7g0241461' => 'rch', 'Rhsim01G0290700' => 'rsi', 'Rhsim04G0234800' => 'rsi', 'Rhsim05G0071600' => 'rsi', 'Rhsim06G0028700' => 'rsi', 'Rhsim07G0242100' => 'rsi', 'Rhsim07G0242700' => 'rsi', 'Rhsim11G0095100' => 'rsi', 'Rhsim11G0179700' => 'rsi', 'Sabra02G0025900' => 'sbr', 'Sabra02G0160900' => 'sbr', 'Sabra04G0105600' => 'sbr', 'Sabra05G0098300' => 'sbr', 'Sabra05G0178500' => 'sbr', 'Sabra07G0017000' => 'sbr', 'Sabra08G0080600' => 'sbr', 'Sabra09G0092100' => 'sbr', 'Sabra10G0110800' => 'sbr', 'SalBow2G3006' => 'sbo', 'SalBow3G1328' => 'sbo', 'SalBow7G1626' => 'sbo', 'SalBow8G1733' => 'sbo', 'SalBow8G2680' => 'sbo', 'SalBow8G3828' => 'sbo', 'SalBow8G4726' => 'sbo', 'SalBow8G5057' => 'sbo', 'Sc02g0005660' => 'sci', 'Sc03g0002510' => 'sci', 'Sc13g0010480' => 'sci', 'Sc16g0002500' => 'sci', 'Sc17g0000450' => 'sci', 'Sc19g0000560' => 'sci', 'Sc25g0003320' => 'sci', 'Sed0003599' => 'sed', 'Sed0010222' => 'sed', 'Sed0015877' => 'sed', 'Sed0016710' => 'sed', 'Sed0017070' => 'sed', 'Sed0017926' => 'sed', 'Sed0018080' => 'sed', 'Sed0018930' => 'sed', 'Sed0021752' => 'sed', 'Sed0024448' => 'sed', 'Sed0026941' => 'sed', 'SEGI_07249' => 'sgi', 'SEGI_18019' => 'sgi', 'SEGI_33617' => 'sgi', 'SGA_v2.0_scaffold11G05844' => 'sas', 'SGA_v2.0_scaffold12G06331' => 'sas', 'SGA_v2.0_scaffold162G37903' => 'sas', 'SGA_v2.0_scaffold18G08400' => 'sas', 'SGA_v2.0_scaffold198G41122' => 'sas', 'SGA_v2.0_scaffold201G41361' => 'sas', 'SGA_v2.0_scaffold334G49066' => 'sas', 'SGA_v2.0_scaffold36G14321' => 'sas', 'SGA_v2.0_scaffold376G50284' => 'sas', 'SGA_v2.0_scaffold58G20507' => 'sas', 'SMO146G0389' => 'smo', 'SMO239G0086' => 'smo', 'Solyc01g079480.3' => 'sly', 'Solyc01g100460.3' => 'sly', 'Solyc01g109880.3' => 'sly', 'Solyc02g084860.1' => 'sly', 'Solyc04g080740.1' => 'sly', 'Solyc06g009640.2' => 'sly', 'Solyc10g054010.1' => 'sly', 'Sopen01g031250' => 'spe', 'Sopen01g043980' => 'spe', 'Sopen01g052070' => 'spe', 'Sopen02g013540' => 'spe', 'Sopen02g029530' => 'spe', 'Sopen03g006520' => 'spe', 'Sopen04g034330' => 'spe', 'Sopen06g004280' => 'spe', 'Sopen10g023850' => 'spe', 'Sp3g31590' => 'spa', 'Sp5g00990' => 'spa', 'Sp5g30530' => 'spa', 'Sp7g32380' => 'spa', 'TAR362G0901' => 'tar', 'TAR365G0392' => 'tar', 'TAR365G0994' => 'tar', 'TAR376G0010' => 'tar', 'TAR381G0238' => 'tar', 'TAR625G0976' => 'tar', 'TAR628G0213' => 'tar', 'TAR636G1432' => 'tar', 'THA.LOC104800343' => 'tha', 'THA.LOC104800346' => 'tha', 'THA.LOC104802154' => 'tha', 'THA.LOC104804242' => 'tha', 'THA.LOC104804348' => 'tha', 'THA.LOC104807300' => 'tha', 'THA.LOC104807470' => 'tha', 'THA.LOC104809255' => 'tha', 'THA.LOC104813815' => 'tha', 'THA.LOC104817459' => 'tha', 'THA.LOC104819620' => 'tha', 'THA.LOC104819771' => 'tha', 'THA.LOC104827669' => 'tha', 'Thecc.01G028100' => 'tca', 'Thecc.01G028200' => 'tca', 'Thecc.01G313300' => 'tca', 'Thecc.02G080900' => 'tca', 'Thecc.02G081000' => 'tca', 'Thecc.04G298600' => 'tca', 'Thecc.07G105700' => 'tca', 'Thecc.08G033000' => 'tca', 'Thecc.08G033100' => 'tca', 'Thhalv10001214m.g' => 'esa', 'Thhalv10006418m.g' => 'esa', 'Thhalv10019604m.g' => 'esa', 'Thhalv10022883m.g' => 'esa', 'Thhalv10027296m.g' => 'esa', 'TPR.G24358' => 'tpr', 'TPR.G30511' => 'tpr', 'TPR.G32194' => 'tpr', 'TPR.G38586' => 'tpr', 'TPR.G4035' => 'tpr', 'TPR.G6027' => 'tpr', 'TWI12G1181' => 'twi', 'TWI18G0286' => 'twi', 'TWI31G0246' => 'twi', 'TWI36G1120' => 'twi', 'TWI36G1574' => 'twi', 'TWI53G0101' => 'twi', 'TWI56G0877' => 'twi', 'TWI73G0459' => 'twi', 'TWI75G1719' => 'twi', 'TWI79G0200' => 'twi', 'TWI79G1689' => 'twi', 'unitig_21.g20304' => 'ugi', 'unitig_21.g20787' => 'ugi', 'unitig_32.g11853' => 'ugi', 'unitig_52.g16900' => 'ugi', 'unitig_60.g25656' => 'ugi', 'unitig_736.g22936' => 'ugi', 'unitig_744.g24253' => 'ugi', 'unitig_748.g7757' => 'ugi', 'vmacro01562' => 'vma', 'vmacro02081' => 'vma', 'vmacro04298' => 'vma', 'vmacro08058' => 'vma', 'vmacro17463' => 'vma', 'vmacro21680' => 'vma', 'VMungo0251G2730' => 'vmu', 'VMungo0720G0587' => 'vmu', 'VMungo1127G1226' => 'vmu', 'VMungo1309G0804' => 'vmu', 'VMungo1309G0807' => 'vmu', 'VMungo1383G1971' => 'vmu', 'Zm00001eb014590' => 'zma', 'Zm00001eb028160' => 'zma', 'Zm00001eb028430' => 'zma', 'Zm00001eb097930' => 'zma', 'Zm00001eb136980' => 'zma', 'Zm00001eb209070' => 'zma', 'Zm00001eb231360' => 'zma', 'Zm00001eb264930' => 'zma', 'Zm00001eb309420' => 'zma', 'Zm00001eb396160' => 'zma' ) $gf_id = 'HOM05D000697' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000697' ) $data_identifier = 'HOM05D000697' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 13, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 9, 'ath' => (int) 4, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 19, 'bol' => (int) 13, 'bra' => (int) 14, 'can' => (int) 11, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 14, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 12, 'din' => (int) 8, 'dzi' => (int) 14, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 11, 'fan' => (int) 19, 'fve' => (int) 4, 'gma' => (int) 22, 'ghi' => (int) 34, 'gra' => (int) 14, 'vvi' => (int) 2, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 10, 'lal' => (int) 17, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 8, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 16, 'osa' => (int) 4, 'pax' => (int) 12, 'pgr' => (int) 9, 'stu' => (int) 11, 'pvu' => (int) 12, 'ptr' => (int) 16, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 4, 'rsi' => (int) 8, 'sbr' => (int) 9, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 10, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 13, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb396160' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1